Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDVTILTIFPEMFPGFLNYSLAGKALEKKIWNLQVINIRFFAKDRHLTVDHIPYGGGAGMIMRPDVVGDAVDSVLSTHKDTKFIYMTPSGTKFDQSIARELVGFPHITILCGRFEGIDQRVIDEYTPYELSIGDYILSGGEPAAMVILDVCVRLLPGVVNNSGSITEESFSYSGGVLEYPQYTRPKQWRKHRVPKILLSGNHKKISDWRQKQSQVITKRRRPELLDGEINDKFT
3IEF Chain:A ((2-228))
KFQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFA-----SVDDTPAGGGAGMVMRADVLAAALDSCPN---DSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEGVDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLPGVMGNEISAKCESFE--NGLLEHPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYALYNKNRQ-
General information:
TITO was launched using:
RESULT:
Template:
3IEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180043 for 1590 contacts (-113.2/contact) +
2D Compatibility (PS) -23937 + (NN) -7566 + (LL) 596
1D Compatibility (HY) -20000 + (ID) 5600
Total energy: -236550.0 ( -148.77 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_3IEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IEF-query.scw
PDB file :
Tito_Scwrl_3IEF.pdb
: