Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGNLSGTVDEVYGDHIILNVNDVGYIIYLSAKALNVCYIGSKIKLLIETCANNRENTTQLYGFINKEEQSCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKIAL-KISGLGPKLINRIITELSGKVSKLETNNNNFYPINEDAVSALINLGYEKTKVYDTIKKYKPNLDTKDIIRTALKELSNYEIDIMQ
1Z00 Chain:B ((827-896))
------------------------------------------------------------LPESEKYNP-GPQDFLLKMPGVNAKNCRSLMHHVKN---IAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE--------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1Z00.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52209 for 456 contacts (-114.5/contact) +
2D Compatibility (PS) -7661 + (NN) -5748 + (LL) 8728
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -59390.0 ( -130.24 by residue)
QMean score : 0.751
(partial model without unconserved sides chains):
PDB file :
Tito_1Z00.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z00-query.scw
PDB file :
Tito_Scwrl_1Z00.pdb
: