Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRIVSSNIL-KYKNCEPKIDESAFIAGDSHIVGKVEIGREASIWFNCVIRGDIGSIKIGDGTNIQDGTVIHVDR----NPGGDTI-IGDMVTVGHFCMLHACTVHDKALIGMGSIVMDHAIVESEAMVAAGSLVTHRKVIKSGEMWAGRPAKFFKKISDEEVKYITQSAQNYIMLMKKYKN
3TIO Chain:C ((2-174))
-------DVLHPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLD
General information:
TITO was launched using:
RESULT:
Template:
3TIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145880 for 1406 contacts (-103.8/contact) +
2D Compatibility (PS) -18554 + (NN) -5266 + (LL) 740
1D Compatibility (HY) -18000 + (ID) 3600
Total energy: -190560.0 ( -135.53 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_3TIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIO-query.scw
PDB file :
Tito_Scwrl_3TIO.pdb
: