Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------MGIKFLNPVTPSSRGTVLVSKIGLSRGK-PEKSLAFGKKSSGGRNNNGRITIRHKG--GGHKKKYRIIDFKRN-----RNDQGVVEKIEYDPNRSG-----FLALVSYKCDDTKSYILAPQGIKPGDIVMSGSGIDILPG---------------NCLPLKGIPIGSFVHGVELKPGSGAVIARAAGCYAQVVGRDGNYVLLRLRS-------------------------GQVRLVLSSCKATIGVVSNPDRKN----RKLGKAGRSRWLGVRPTVRGVAMNPVDHPHGGGEGKTSGGRHPVTPWG---VATKGKKT------RKKNKFSDKYIKQLKG |
| 1NA6 Chain:A ((4-398)) | SVFHNWLLEIACENYFVYIKRLSANDTGATQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWVCASTDEEDVIETAIGEVIPGALIS-GPAGQILGGLSLQQAPVNHKYILPEDWHLRFPSGSEIIQYAASHYDPDEQLLDRRRVEYDIFLLVEELHVLDIIRKGFGSVDEFIALANSVSNRRKSRAGKSLELHLEHLFIEHGLRHFATQAPDFLFPSAGAYHPLRMLAVKTTCKDRWRQILNHLFTLQEGVSLAQYREMRESGVRLVVPSSLHKKYPEAVRAELMTLGAFIAELTG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NA6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 22033 for 1775 contacts (12.4/contact) +
2D Compatibility (PS) -28604 + (NN) -4946 + (LL) -28
1D Compatibility (HY) -6000 + (ID) 2200
Total energy: -19745.0 ( -11.12 by residue)
QMean score : 0.178
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