Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSPCPRAKVCFSPGEDCAVLIISEIDQSKESVLVQEYT-FT----LETIARALINAKERS--VDVEVILDKSQLHSK--------YSVINKLFS--NGIPVWIDD------KPKIAHNKVIIVDNQKVITGSFNLTKTAK----KGNAENLLIIKNYPELVQQYVKNWEIRKSQSYKYAS
1V0W Chain:A ((65-224))
---------------KRLLAKMTENIGNATRTVDISTLAPFPNGAFQDAIVAGLKESAAKGNKLKVRILVGAAP--HMNVIPSKYRDELTAKLGKAAENITLNVASMTTSKTAFSWNHSKILVVDGQSALTGGINSWKDDYLDTTHPVSDVDLALTG--PAAGSAGRYLDTLWTWTCQNKS
General information:
TITO was launched using:
RESULT:
Template:
1V0W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59590 for 898 contacts (-66.4/contact) +
2D Compatibility (PS) -14225 + (NN) -3077 + (LL) 652
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -81590.0 ( -90.86 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_1V0W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V0W-query.scw
PDB file :
Tito_Scwrl_1V0W.pdb
: