Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MHKYKNIGYVASES-PKSQEVSKLLQKL----NFI---NI---T------------------------EENKSEVDLLVVVGGDGLMLHTLHNYVVGNKDIHVYGVNTGSVGFLMNKYFSSSEDLIDNIEHATSAQLTLLKMEAIDLSG-KKYHHVAVNEVYVFRK-ANQIVEMNVAINSKLKMEKFRGDGIILSTPTGSTAYNFSAGGPILPLNSNLFALTSINSYYPRHWNGALISNDTIVQIDINNAQNRPALVVSDYKE---LHNISQIKMQKDHENTVTLLFD--KDYSLDERIFDRQFLY |
3PFN Chain:A ((36-354)) | -KSPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQG--SVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGNAAVVLRSRLKVRVV--KQAMQYQVLNEVVIDRGPSSYLSNVDVYLDG-HLITTVQGDGVIVSTPTGSTAYAAAAGASMIHPNVPAIMITPICPHSLS-FRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSC-YPLPSICVRDPVSDWFESLAQCLHH- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PFN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -125507 for 1990 contacts (-63.1/contact) +
2D Compatibility (PS) -27235 + (NN) -10223 + (LL) 172
1D Compatibility (HY) -12400 + (ID) 2400
Total energy: -177593.0 ( -89.24 by residue)
QMean score : 0.417
|
|
|