Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNFKSVVLCILDGWGNGIGDSKYNAISNANPPCWQYISSNYPRCSLSACGTDVGLPDGQIGNSEVGHMNICSGRVVMQSLQRIDREIKTIENNKNLRSFISDLKDKNGVCHIMGLVSDGGVHSHQKHISTLANKISQHEIKVVIHAFLDGRDTLPNSGKKCVQEFEENIKGNDIRIATVSGRYYAMDRDNRWERTIETYEAIAFARATCHNNVMSLIDNNYQNNITDEFIRPTVIGDYKGIELKDGVLLANFRADRMIQLASILLGKTGYTEVAKFSSILSMMKYKEDLQIPCLFPPAFFTNTLGEIIADNKLRQLRIAETEKYAHVTFFFNCGKEEPFSNEERILIPSPKVETYDLQPEMSAFELTEKLVGKIRS--QEFTLIVANYANPDM-VGHTGNMEAAKKAVLAVDDCLAKVLNTVKEINDAVLIVTADHGNVECMFDEKNNTPHTAHTLNKVPFIIYPNSCNN-LKLKDGRLSDIAPTILQLLGIKKPDEMTGSSLIV |
| 3M7V Chain:A ((229-402)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPFAPTVLNKLADAGVSTYAVGK----IN-DIFNGSGITNDMG------------------HNKSNSHGVDTLIKTMGLSAFTKGFSFTNLVDFDALYGHRRNAHGYRDCLHEFDERLPEIIAAMK--VDDLLLITADHGNDPTY-------AGTDHTREYVPLLAYSPSFTGNGVLPVGHYADISATIADNFGVDTAM--IGESFLD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M7V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52158 for 1183 contacts (-44.1/contact) +
2D Compatibility (PS) -18548 + (NN) -7866 + (LL) 19516
1D Compatibility (HY) -7600 + (ID) 2000
Total energy: -68656.0 ( -58.04 by residue)
QMean score : 0.479
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