Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKKVKLGILISGRGSNMQALMKACQNYGFPAEMACVISNNNKAAGLKVAEQAGMPTFVVENK----PLDVDK-IHEILVQHEVNLVCLAGFMRILKADFLNKWHGKVINVHPSLLPSFKGLNAQEQALKAGVKVTGCTVHYVTSEVDAGAIIAQAAVPVLPNDDIHSLSKRILSEEHKCYVEAVRLIAMLSRKLERP
1RC0 Chain:B ((2-185))
-----RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGEN
General information:
TITO was launched using:
RESULT:
Template:
1RC0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141498 for 1455 contacts (-97.2/contact) +
2D Compatibility (PS) -20296 + (NN) -15624 + (LL) 736
1D Compatibility (HY) -19200 + (ID) 4600
Total energy: -200482.0 ( -137.79 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_1RC0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RC0-query.scw
PDB file :
Tito_Scwrl_1RC0.pdb
: