Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSTSAIFFSEGSYIVIMNNIIVKKFGGTSLTDLTRVANLIKKDV---DKGYRIIVVVSAIAGLTDQMVFQARQTLNLSHKQALSEYDVMLSAGEQISCGLLAITLLSIGVNAKSWLAWQLPIITDNSYSESKIKTIKIDHLKRSFAEGYTVAIIAGFQGIYDDRITTFGRGGSDISAVALAVAFGVRVCEIFTDIDGIYTADPKIVPKARKLKSISYDEMLEMSSSGAKILHNRSVQLAMKHNIKVQVLSTFKEVEGTAVLH--ENDVLERHTITGITYSTNEALITFTNFAN----TLRTLKDMAGANIKIDMIHGSSIVISEFDIDL-----------MKELLNKNE-----DYVINNNAAKISIIGIGVMSVMYHTLKF---FSEKKIEILAITASEIKISIIVQRECAEALVRDLHTELMCTEGG |
| 3AB4 Chain:E ((3-405)) | -------------------LVVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVPPAR---EMDMLLTAGERISNALVAMAIESLGAEAQSFTG-------------------TPGRVREALDEG-KICIVAGF----------LGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSNDPGTLIAGSMEDIPVEEAVLTGVATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN-------TTDITFTCPRSDGRRAMEILKKL-QGNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDLDAAARALHEQFQLGG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AB4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -256714 for 2690 contacts (-95.4/contact) +
2D Compatibility (PS) -36282 + (NN) -11263 + (LL) 4780
1D Compatibility (HY) -24800 + (ID) 6000
Total energy: -330279.0 ( -122.78 by residue)
QMean score : 0.495
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