Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISKEDLLELMKIRHSRRSYGQSKLAHQEEINMLIETAWLSPSRYGDEPWRQVICNRQSNQDAWEKLLSCPTEPNQKWAKDTQILIISLSTKNFHD--HTKIVNFWGSHDTGIANYTFMLQSYIYEFNAHQMSRFDRNKIVKNSIYQMILI
3QDL Chain:A ((4-173))
-LDQEKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTDK---DLKKQIAAHSY-FNEEMIKSASALMVVCSLRPSELLP-MQRLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEVLEERINKP
General information:
TITO was launched using:
RESULT:
Template:
3QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20699 for 892 contacts (-23.2/contact) +
2D Compatibility (PS) -15072 + (NN) -9922 + (LL) 368
1D Compatibility (HY) -5200 + (ID) 1300
Total energy: -51825.0 ( -58.10 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_3QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QDL-query.scw
PDB file :
Tito_Scwrl_3QDL.pdb
: