Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSQSPKRMYGTGNNFVIIDSRSINNLNWNYREIA---------N-QNGCDQIIVITNSSAADCFMHIYNADGGEVEMCGNAARCVGYLIMSEKST--EYATIELVNKRILECFKVGG----RSIKVNMGKPLFKWHEIPLSAKCDPLHLPIEL---EMLKDPVAVNIGNPHMVFFVDNISEIPLQSLGPKLEKHTLFPKKVNVNIAQVEKSGEISLRVWERGTG--ITASCGSAACAALIASVLRGYLITRQTSVNLPGGKLLIEWPD--NIFMTGDIGFL |
| 2OTN Chain:A ((2-277)) | -SQFSFTKMHGLGNSYIYVNMFEE---QIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIV-TAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMER-GKEITVHLAGGDLMIAWTEEGNVLMKGPAEVI |
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General information:
TITO was launched using:
| RESULT:
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Template: 2OTN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194494 for 2106 contacts (-92.4/contact) +
2D Compatibility (PS) -27514 + (NN) -5096 + (LL) 604
1D Compatibility (HY) -11200 + (ID) 3950
Total energy: -241650.0 ( -114.74 by residue)
QMean score : 0.450
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