Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDLGPIIENWHEWLRCYRSYSSNTLESYMRDLK-DFISFLSAHIGEEVNVGSLEKLSVPELRSWFSFRYARGINARSNTRALSVIRNFFKYIKNNYEVNNEAVFSLSRPIQRRTLPKALSISDIKTLVDFFLHNYSLQETHSSLSFQYATKKKESVLSTQLYKHCNFSLPGFQCSDTRKLIINKRTLSIKNWIPVLSIGTTEGNTKTSVKEIKLLDLGEPWIIKREIAIIVLLYGTGLRISEALNLKVSDISNESLIVTGKGDKQRQVFILPVVKMFIQEYVKACPYLSVNNEAQHLFVGVRGKKLGRTYVANRLQKIRRMLNLPEIVSPHAFRHSFATHLLQENVDIRFIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQQSLEKDKKLKL |
| 2KD1 Chain:A ((6-105)) | LSYGEYLESWFNTK--RHSVGIQTAKVLKGYLNSRIIPSLGNI--------KLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKADKEELEHHHHHH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KD1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -65865 for 710 contacts (-92.8/contact) +
2D Compatibility (PS) -9976 + (NN) 2119 + (LL) 21236
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -55336.0 ( -77.94 by residue)
QMean score : 0.520
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