Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLRKNLITSESVAAGHPDKVADQISDAVLDEYLLTDPFSRTAIETLVTKDNVIIAGEVF-GPNVANSTIENVVRNTIKDIGYEHD--GFHWGEVGVNMLLHEQSNDIAIGVDQGAGDQGIMYGYATIETKSLMPAPIFYAHSILKNVMSVVKEAKLG---PDAKSQITLAYESNLPVRAESIIVSIQHPEDLDQLK-----VKEIIYPYVVSSLPKGWMCAEE-NFFVNPTGRFVIGGPVSDCGLTGRKIMVDTYGGYIPHGGGAFSGKDATKVDRSAAYMARYLAKNIVFANLAERCLVQLSYAIGVSKPTSFYIDTFGTNKVDEERIKKLIESNIDLSTRGIIKHLSLSRPIYKRTACYGHFGKESEEDDGFSWENLNLSLDLSREFSVQSNRKVSLDC |
3TDE Chain:D ((10-406)) | ----GRLFTSESVTEGHPDKICDAISDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTSAKEAFADITNTVRARILEIGYDSSDKGFDGATCGVNIGIGAQSPD---------GDQGLMFGYAINATPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIAYEDNVPVRLDTVVISTQHAADIDLEKTLDPDIREKVLNTVLDDLAHETLDASTVRVLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAERVEVQVAYAIGKAAPVGLFVETFGTETEDPVKIEKAIGEVFDLRPGAIIRDLNLLRPIYAPTAAYGHFGRTDVE---LPWEQLDKVDDLKRAI------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TDE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176082 for 3117 contacts (-56.5/contact) +
2D Compatibility (PS) -38015 + (NN) -13304 + (LL) 1636
1D Compatibility (HY) -27600 + (ID) 9100
Total energy: -262465.0 ( -84.20 by residue)
QMean score : 0.469
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