Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLNLFNNNQVDYSRQNYIILDEN-KHIYNAVINDLS----WKYLFLFGPKGSGKTHLAHIWQSINNAIFINVNNFI------------SEIRYSNAFILEDVQDIQ--DEATLLHCYNYMKE----------------NNKRLLITSSTSPKRLNFKLKDLSSRILSTISAKIPSASEELLRIMLIKRFSDKQLKVDLKVINYILARIERSFCSINRIIEKIDNGS---MGSNVTIPFVSTLLKRDTT
1HQC Chain:A ((9-237))
------------KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG---LITAPLLSRFG--IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL
General information:
TITO was launched using:
RESULT:
Template:
1HQC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137322 for 1501 contacts (-91.5/contact) +
2D Compatibility (PS) -19783 + (NN) -4428 + (LL) 948
1D Compatibility (HY) -2400 + (ID) 1550
Total energy: -164535.0 ( -109.62 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_1HQC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HQC-query.scw
PDB file :
Tito_Scwrl_1HQC.pdb
: