Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------------MIIYMNTIKNTIYTEAIFSKDEKH-RYLLKK-----TWDEKKPACTVITMYPHLDGVLSLDLT----TVL--ILNQLANS----ERYGAVYLVNL-FSNIKTPENL-KHIKEPYDKHTDIHLMKAISESDTVILAYGAYAKRPV-VVERVEQVMEMLKPHKKKVKKLINPATNEIMHPLNPKARQKWTL-KA-------------------
4G3A Chain:A ((5-231))
KPSDLDGFIQQMPKADMRVKVQLAEDLVTFLSDDTNSIVCT--------DMGFLIDGLMPWLTGSHFKIAQKSLEAFSELIKRLGSDFNAYTATVLPHVIDRLGDSRDTVREKAQLLLRDLMEHRVLPPQALIDKLATSCFKHKNAKVREEFLQ--TIVNALHEYGTQQLSVRVYIPPVCALLGDPTVNVREAAIQTLVEIYKHVGDRLRPDLRRMDDVPASKLAMLEQKFDQVKLE
General information:
TITO was launched using:
RESULT:
Template:
4G3A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75640 for 1112 contacts (-68.0/contact) +
2D Compatibility (PS) -16814 + (NN) -7159 + (LL) 504
1D Compatibility (HY) -10800 + (ID) 1500
Total energy: -111409.0 ( -100.19 by residue)
QMean score : 0.246
(partial model without unconserved sides chains):
PDB file :
Tito_4G3A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G3A-query.scw
PDB file :
Tito_Scwrl_4G3A.pdb
: