Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------------------------MNYDKKMINRINRIQGQLNGIIKMMEEGKDCKDVITQISASKSSLQRLMGIIISENLIECVKVAADDEESSQELINEAVNLLVKSK-------------------------------------
4GA2 Chain:A ((2-145))
RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE---AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN---------TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED
General information:
TITO was launched using:
RESULT:
Template:
4GA2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2164 for 491 contacts (-4.4/contact) +
2D Compatibility (PS) -7856 + (NN) -2631 + (LL) 1556
1D Compatibility (HY) -4400 + (ID) 450
Total energy: -15945.0 ( -32.47 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_4GA2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GA2-query.scw
PDB file :
Tito_Scwrl_4GA2.pdb
: