Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRLLVTSEKPGAGKSTVVSNVAITYAQAGYKTLVIDGDMCKPTQNYIFNEQNNNGLSSLIIGRTTMSEAITSTEIENLDLLTAGPVPPNPSELIGSERFKELVDLFNKRYDIIIVDTPPVNTVTDAQLYARAIKDSLLVIDSEKNDKNEVKKAKALMEKAGSNILGVILNKTKVDKSSSYYHYYGDE
3LA6 Chain:A ((65-270))
-------------VGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASA---------
General information:
TITO was launched using:
RESULT:
Template:
3LA6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68844 for 1720 contacts (-40.0/contact) +
2D Compatibility (PS) -22672 + (NN) -14133 + (LL) 1280
1D Compatibility (HY) -16000 + (ID) 3600
Total energy: -123969.0 ( -72.08 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_3LA6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LA6-query.scw
PDB file :
Tito_Scwrl_3LA6.pdb
: