Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
2ZDO Chain:B ((5-109))
-FMAEARLTLTKGTAKDIIERFYTRHGIETLEGFDGMFVTQTLEQEDFDEVKILTVWKSKQAFTDWLKSDVFKAAHKHVRSKNED--ESSPIINNKVITYDIGYSYMK
General information:
TITO was launched using:
RESULT:
Template:
2ZDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14151 for 671 contacts (-21.1/contact) +
2D Compatibility (PS) -11293 + (NN) -1765 + (LL) -40
1D Compatibility (HY) -12800 + (ID) 3400
Total energy: -43449.0 ( -64.75 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_2ZDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZDO-query.scw
PDB file :
Tito_Scwrl_2ZDO.pdb
: