Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRRKRKWLIVICVLLVLITISQILKHFNYGTESKEAYNTYTVEKERQLDLQGKAYPREVKTYYKNNQVGTYLGVQVADGQTVKKGDMLINYKINSNKRQQLVDKINDTQHIITEVYLNITKGLNNREIQKKLIEYKQTLYEAQQQLYQYDSQNRDSMYASFDGKIMIKNIDN---DSDNQPILYLISKESHIKTSVTEFDLNKVKKGDKVNLSITSTGKTGAGIIKQISELPISYEENLSLHENDALHLPESNNDGELANSKSISASPIFKSNNNSELSKYGVIIDDLSLPIRAGYSLEIKVPLNAIKIPKSVLTKGNNVFIVNKNSIVEKRNIRIKRINGDIIVEKGLKPGDKLIKQPKSTMNDGDKVEISS |
| 1GJX Chain:A ((9-78)) | ------------------------------------------------------------DIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKA---------------------------------------------------------TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GJX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19045 for 438 contacts (-43.5/contact) +
2D Compatibility (PS) -6881 + (NN) 608 + (LL) 20004
1D Compatibility (HY) -3600 + (ID) 550
Total energy: -9464.0 ( -21.61 by residue)
QMean score : 0.220
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