Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MKGMFLSSFYATRKQTYIYFIVAI--IAAGYFAVFNPLMSSAMAGVMLITPITDNIKHEKDSRWMYY-VSTLPVKRSDYIKSYFAFYLILFGAS------LMIGLVVTTIVTQSVMIGIMSGLMSFGIIGAYSIIFPLTFKFGAENSNVIMIVASILLLFSFVVFFFIYGMVSGASALEFEKISTEGWLVVIVYAVIGIVITSVSYILSIKIFNKQEL
2HD0 Chain:A ((2-128))
SHMQASLLKVPYFVRVQGLLRICALARKIAGGHYVQMAIIKLGALTG----TYVYNHLTPLRD--WAHNGLRDLAVAVEPVVFSRMETKLITWGADTAACGDIINGLPVSARRGQEILLGPADGMVSKGWRLL---------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2HD0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75177 for 693 contacts (-108.5/contact) +
2D Compatibility (PS) -11631 + (NN) 5913 + (LL) 9740
1D Compatibility (HY) -4800 + (ID) 1400
Total energy: -77355.0 ( -111.62 by residue)
QMean score : 0.117
(partial model without unconserved sides chains):
PDB file :
Tito_2HD0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HD0-query.scw
PDB file :
Tito_Scwrl_2HD0.pdb
: