Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSKLKVKDLVFVDDSVKRYK
3UDV Chain:A ((3-142))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGR---ERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEM----------------
General information:
TITO was launched using:
RESULT:
Template:
3UDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107444 for 1013 contacts (-106.1/contact) +
2D Compatibility (PS) -14211 + (NN) -6316 + (LL) 2168
1D Compatibility (HY) -11200 + (ID) 2750
Total energy: -139753.0 ( -137.96 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_3UDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDV-query.scw
PDB file :
Tito_Scwrl_3UDV.pdb
: