Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANKKSTN
1WKQ Chain:B ((33-111))
------------------------PFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAE-----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1WKQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66281 for 598 contacts (-110.8/contact) +
2D Compatibility (PS) -8747 + (NN) -5859 + (LL) 5052
1D Compatibility (HY) -6800 + (ID) 1900
Total energy: -84535.0 ( -141.36 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_1WKQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WKQ-query.scw
PDB file :
Tito_Scwrl_1WKQ.pdb
: