Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGL-TACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKLSSDALHQAFN
2BQX Chain:A ((64-141))
--------------------------------------------------------------------------DGDPVDALVLSDVAFQAGSVVKARLVGVLNMED-ESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYK----------------
General information:
TITO was launched using:
RESULT:
Template:
2BQX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11600 for 419 contacts (-27.7/contact) +
2D Compatibility (PS) -7976 + (NN) -720 + (LL) 4936
1D Compatibility (HY) -1600 + (ID) 350
Total energy: -17310.0 ( -41.31 by residue)
QMean score : 0.001
(partial model without unconserved sides chains):
PDB file :
Tito_2BQX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BQX-query.scw
PDB file :
Tito_Scwrl_2BQX.pdb
: