Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILT-------HEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
4EGG Chain:B ((95-183))
-----------------------------------------------------------------------------ITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNP--CKVVRK
General information:
TITO was launched using:
RESULT:
Template:
4EGG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60676 for 555 contacts (-109.3/contact) +
2D Compatibility (PS) -8984 + (NN) -2394 + (LL) 7248
1D Compatibility (HY) -7200 + (ID) 1900
Total energy: -73906.0 ( -133.16 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_4EGG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EGG-query.scw
PDB file :
Tito_Scwrl_4EGG.pdb
: