Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRLGKMSDLDQILNLVEEAKELMKEHDNEQWDDQYPLLEHFEEDIAKDYLYVLEENDKIYGFIVVDQDQAEWYDDIDWPVNREGAFVIHRLTGSKEY--KGAATELFNYVIDVVKARGAEVILTDTFALNKPAQGLFAKFGFHKVGEQLMEYPPYDKGEPFYAYYKNLKE
1MK4 Chain:A ((2-131))
DIRTITSSDYEMVTSVLNEWWGGR------QLKEK--LPRLFFEHFQD-TSFITSEHNSMTGFLIGFQSQS-----------DPETAYIHFSGVHPDFRKMQIGKQLYDVFIETVKQRGCTRVKCVTSPVNKVSIAYHTKLGFDIEKGTK---------------------
General information:
TITO was launched using:
RESULT:
Template:
1MK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80583 for 848 contacts (-95.0/contact) +
2D Compatibility (PS) -13432 + (NN) -2789 + (LL) 1368
1D Compatibility (HY) -3200 + (ID) 1400
Total energy: -100036.0 ( -117.97 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_1MK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MK4-query.scw
PDB file :
Tito_Scwrl_1MK4.pdb
: