Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MKNYSFYQFVMTVRGRHDDKGRLAEEIFDDLAFPKHDDDFNILSDYIETHGDFTLP-------MSVFDDLYEEYTEWLKF---------
2CO5 Chain:A ((5-96))
KYMRINYYIILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFFKKIVCHHH
General information:
TITO was launched using:
RESULT:
Template:
2CO5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17529 for 488 contacts (-35.9/contact) +
2D Compatibility (PS) -7971 + (NN) -1579 + (LL) 0
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -33029.0 ( -67.68 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_2CO5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CO5-query.scw
PDB file :
Tito_Scwrl_2CO5.pdb
: