Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLN---KTEDFAKLVDQTTLDLTYKADKGQC-VILDNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQIK
1KDO Chain:B ((8-222))
-----ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASED-ALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQ--
General information:
TITO was launched using:
RESULT:
Template:
1KDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68473 for 1684 contacts (-40.7/contact) +
2D Compatibility (PS) -22882 + (NN) -7560 + (LL) 940
1D Compatibility (HY) -14000 + (ID) 4250
Total energy: -116225.0 ( -69.02 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_1KDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KDO-query.scw
PDB file :
Tito_Scwrl_1KDO.pdb
: