Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH
3MMX Chain:F ((3-190))
MRKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQI---------TSVESRLQMLELATEAEEHFSICLEELS----SYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYE-
General information:
TITO was launched using:
RESULT:
Template:
3MMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158197 for 1349 contacts (-117.3/contact) +
2D Compatibility (PS) -18706 + (NN) -6760 + (LL) 72
1D Compatibility (HY) -18800 + (ID) 3300
Total energy: -205691.0 ( -152.48 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_3MMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MMX-query.scw
PDB file :
Tito_Scwrl_3MMX.pdb
: