Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDDLNKKYLIDLHQHQNSSIEVLREFAEG--NEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV----NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKGE
2AVD Chain:A ((19-229))
--SRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKG-----DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI-
General information:
TITO was launched using:
RESULT:
Template:
2AVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106714 for 1740 contacts (-61.3/contact) +
2D Compatibility (PS) -21715 + (NN) -3668 + (LL) 520
1D Compatibility (HY) -8800 + (ID) 2150
Total energy: -142527.0 ( -81.91 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_2AVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AVD-query.scw
PDB file :
Tito_Scwrl_2AVD.pdb
: