Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHD-IKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELF-EATDDFDYIVAMDQSNVDNIKSIN---PNLKGQLFKLLEFSNMEESDVPDPYYTN--NFEGVYDMVLSSCDNLIDYIVKDANLKEG
2P4U Chain:D ((11-157))
---VLFVCLGNICRSPIAEAVFRKLVTDEKVSDNWAIDSSAVSDWNVGRPPDPRAVSCLRNHGISTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEVVYQQCLRCCKAFLE-----------
General information:
TITO was launched using:
RESULT:
Template:
2P4U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85482 for 1171 contacts (-73.0/contact) +
2D Compatibility (PS) -15056 + (NN) -8157 + (LL) 1036
1D Compatibility (HY) -13200 + (ID) 2500
Total energy: -123359.0 ( -105.35 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_2P4U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P4U-query.scw
PDB file :
Tito_Scwrl_2P4U.pdb
: