Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------MAQDIISTIGDLVKWII---DTVNKFTKK------------------------------------
4MYY Chain:A ((2-85))
SALEAKLLDEIKQSSNQELESSIDQILESIINGGSMLNKFTKKEQILSEKQQIKQLSPLQRAALALKKLETKLNNTLHE
General information:
TITO was launched using:
RESULT:
Template:
4MYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2911 for 88 contacts (-33.1/contact) +
2D Compatibility (PS) -2580 + (NN) -522 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -8563.0 ( -97.31 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_4MYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MYY-query.scw
PDB file :
Tito_Scwrl_4MYY.pdb
: