Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLG-SREGIAKAKSEITIG-LKDNGTFIYDGDEPLLKPHVKEVENAKC-ISIGVATDNALVCSVDD-RDTTGISFTIN----NKEHYDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTL----ENDITVINDAYNASPTSMRAAIDTLGTLT--GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAK-----------YIYDSGQQH-VEKAQHFNSKDDMIEVLTSDLKAHDRVLVKGSRGM-K-LEEVVNALIS |
1P3D Chain:A ((118-473)) | ---------------------------------------------------------------------------------------------------------RHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGL----VKSAGKNAHLGASRYLIAEADESDA-----SFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP-FYGLAVMCADDPVLMELVPKVG--RQVITYGFSE-QADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHR--YSRTRDLFDDFVQVLSQ--VDALIMLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGSVSKISRGLAESW-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1P3D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -108043 for 2874 contacts (-37.6/contact) +
2D Compatibility (PS) -34103 + (NN) -3892 + (LL) 9060
1D Compatibility (HY) -12000 + (ID) 3500
Total energy: -152478.0 ( -53.05 by residue)
QMean score : 0.457
|
|
|