Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKK--ENIECESVLKSGDLIDVVLDMAK--DYDLLLIGASESNLLYR-LFISHQNSLVEQSSIPVVIAK
2DUM Chain:A ((6-155))
RKVLFPTDFSEGAYRAVEVFEKRNKME-VGEVILLHVIDEGTLEELM---ELKDIKEKLKEEASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGK--LSHEFLGSTVMRVLRKTKKPVLIIK
General information:
TITO was launched using:
RESULT:
Template:
2DUM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63074 for 934 contacts (-67.5/contact) +
2D Compatibility (PS) -13864 + (NN) -1131 + (LL) 404
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -84465.0 ( -90.43 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_2DUM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DUM-query.scw
PDB file :
Tito_Scwrl_2DUM.pdb
: