Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSITIPIVIAFDNHYAIPAGVSLYSMLACAKSENPKSQNPQLQSDNKKLFYKIHCLVD-NLSLENQQKLKETLVPFSAFASVDFLDISTPNLYTTSVEPSVIDKIHEAFLQLNIYAKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYFGAAKDFSSPKSLKHFQTEREREPRQKFSLYEHYLKEKDMQIICENHYNVGFLIVNLKLWRADKLEEHLLNLTHQKGQCVFCPEQDLLTLACYQ-----KVLQLPYIYNAHPFMANQKR--FIPNQQEIIMLHFYFVGKPWILPTA----------LYSKEWHEILLKTPFYAEYSVKFLKQMTECLSLQDKQKTFEFLAPLLNPKTLLEYVFFRLSKIFKRLKERFLNS |
1LL2 Chain:A ((1-262)) | MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTS------------------RRLAVLTTPQVSDTMRKALEIVFDEV--I-TVDILDSGDS---------------AHLT----LMKRPEL-GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFERE----ELSAAPDPG-----------------------------------WPDCFNSGVFVYQPSVET----YNQLLHVASEQ-GSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRTHPQFLNVWWDIFTTSVVPLLQQ------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LL2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -227079 for 1982 contacts (-114.6/contact) +
2D Compatibility (PS) -24754 + (NN) -7585 + (LL) 10136
1D Compatibility (HY) -9200 + (ID) 2500
Total energy: -260982.0 ( -131.68 by residue)
QMean score : 0.348
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