Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNA---NLVDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILALLEATQNAPFM--ATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRDFDAKRQTPLLGHIGIYGFHNKEILEELCALKPCVLEDTEKLEQLRALYYQKKILVKIVQSESMGIDTKEDLQNALKIFSPNLLKR
1GQC Chain:B ((4-226))
VIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVE---VMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKAR---YLKHVGIYAYR-RDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQEL---
General information:
TITO was launched using:
RESULT:
Template:
1GQC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128897 for 1693 contacts (-76.1/contact) +
2D Compatibility (PS) -23718 + (NN) -11187 + (LL) 452
1D Compatibility (HY) -14800 + (ID) 4150
Total energy: -182300.0 ( -107.68 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_1GQC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GQC-query.scw
PDB file :
Tito_Scwrl_1GQC.pdb
: