Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQEILIPLKEKSYKVFLGELPEIKLKQKALIISDSIVAGLHLPYLLERLNALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYGKNLIGSFHQPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKN----LVERLET----------------KDLKDCLEEVIFQSVNIKAQVVVQDEKERNIRAGLNYGHTFGMLIENETNYERFLHGEAIAIGMRMANDLALSLGMLTLKEYERIENLLKKFDLIFNYQITDIQKFYE-----------RLFLDKKSENQTLKFILPKGVGA-FEI-ASHIPKETILKVLEKWH |
| 1NVE Chain:D ((104-391)) | -----------------------------------------------------------------------------------GRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKARILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILT-PQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMAL---------KIVLLSAIGTPYETRASVVANEDIRVVLA--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NVE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -150752 for 1965 contacts (-76.7/contact) +
2D Compatibility (PS) -25760 + (NN) -3946 + (LL) 8592
1D Compatibility (HY) -20800 + (ID) 5400
Total energy: -198066.0 ( -100.80 by residue)
QMean score : 0.517
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