Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMREILTNRFFPSLFKKRLDFSNRVVLGLGSNLKNPLKILKSCFLYFKNHSKIGKIFSSPIYINPPFGYTNQPNFYNATIILKTSLGLRHFFALVFYIERRFGRARKRDFKDAPRTLDIDIIAFNQVILRQNDLTLPHPKWSERDSVLVPLTLQQILFKREEW
3UDE Chain:A ((5-128))
--------------------------IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGR----E-RWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDG
General information:
TITO was launched using:
RESULT:
Template:
3UDE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78867 for 864 contacts (-91.3/contact) +
2D Compatibility (PS) -12997 + (NN) -9839 + (LL) 2852
1D Compatibility (HY) -6800 + (ID) 1950
Total energy: -107601.0 ( -124.54 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_3UDE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDE-query.scw
PDB file :
Tito_Scwrl_3UDE.pdb
: