Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MCGVLSLQARLSFENCSKPLD----CSLFATTCTP-QNPIGSCMVSSQGGVCGVLSLQARLSFE------------NCSKPLDCSLFATTCTPQNPI------GSCMVSSQGGVR--GVLSLQARLSFKNCFLVKSLKPSQLTLMLTGFLGGFSFLTTGFW---
4UJ5 Chain:C ((23-194))
QPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKAECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEE
General information:
TITO was launched using:
RESULT:
Template:
4UJ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54988 for 888 contacts (-61.9/contact) +
2D Compatibility (PS) -13736 + (NN) -2074 + (LL) 0
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -78348.0 ( -88.23 by residue)
QMean score : 0.058
(partial model without unconserved sides chains):
PDB file :
Tito_4UJ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UJ5-query.scw
PDB file :
Tito_Scwrl_4UJ5.pdb
: