Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPTIDFTFCEINPKKGFGGANGNKISLFYNNELYMVKFPPKPSTHKEMSYTNGCFSEYVACHIVNSLGLKVQETLLGTYKNKIVVACKDFTTHQYELVDFLSLKNTMIELEKSGKDTNLNDVLYAIDNQHFIEPKVLKCFFWDMFVADTLLGNFDRHNGNWGFLRASNSKEYQIAPIFDCGSCLYPQADDVVCQKVLSNIDELNARIYNFPQSILKDDNDKKINYYDFLTQTNNKDCLDALLRIYP-RIDMNKIHSIIDNTPFMSEIHKEFLHTMLDERKSKIIDVAHTRAIELSLQHKQAHSNPYDNADDLDNSNEYTPTPKRRR |
4M16 Chain:A ((2-226)) | -------------------------AHHHHHHMVLNYFYPGTKTLK------------------NKLGIM--------------------GYKQLEKRCKRNAKKVINSLRNEPLPETFDSSYLKYLHKRLFGS----AFEWAGYTRDLSFAFDDGTIAQMSMMKIPGTDIY------------------------FAHGDKIQENLKEFDEILASKSNLQGLSREDFIEETVK--LFSFLNYIHPFRAGNEAVQHIFFEKLAEAAGHKLDFSVVTEERIMRACNDAMA------LKGEEAHQAMKSLFEDISNPEEVIILRDF-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4M16.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 10968 for 1608 contacts (6.8/contact) +
2D Compatibility (PS) -22839 + (NN) -1825 + (LL) 6584
1D Compatibility (HY) -4000 + (ID) 1900
Total energy: -13012.0 ( -8.09 by residue)
QMean score : 0.210
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