Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWVEDNPNDGSKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSLEIQRLQLEIGGLRGVKFAKLTKASSFEYNE
2WVD Chain:B ((9-143))
--------SIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLSTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLTKASS-----
General information:
TITO was launched using:
RESULT:
Template:
2WVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48250 for 823 contacts (-58.6/contact) +
2D Compatibility (PS) -15371 + (NN) -9282 + (LL) 228
1D Compatibility (HY) -18000 + (ID) 6550
Total energy: -97225.0 ( -118.13 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_2WVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WVD-query.scw
PDB file :
Tito_Scwrl_2WVD.pdb
: