Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIAKTAIISPKAEIGKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFIGKNTEIFPFAVLGTQPQDLKYKGEYSELMVGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRGLNRHRMRQL-LESKDIDFIHALYKRLFRPIPSLRESAKLELEEHANNPFVKEICSFILESSRGVAYKSSEYSSEEKQEE
5DEP Chain:E ((2-256))
-SLIDPRAIIDPSARLAADVQVGPWSIVGAEVEIGEGTVIGPHVVLKGPTKIGKHNRIYQFSSVGEDTPDLKYKGEPTRLVIGDHNVIREGVTIHRGTVQDRAETTIGDHNLIMAYAHIGHDSVIGNHCILVNNTALAGHVHVDDWAILSGYTLVHQYCRIGAHSFSGMGSAIGKDVPAYVTVFGNPAEARSMNFEGMRRRGFSSEAIHALRRAYKVVYRQGHTVEEALAELAESAAQFPEVAVFRDSIQSATRGITR-------------
General information:
TITO was launched using:
RESULT:
Template:
5DEP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -238915 for 2227 contacts (-107.3/contact) +
2D Compatibility (PS) -27529 + (NN) -7318 + (LL) 984
1D Compatibility (HY) -16400 + (ID) 5000
Total energy: -294178.0 ( -132.10 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_5DEP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DEP-query.scw
PDB file :
Tito_Scwrl_5DEP.pdb
: