Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATKSFKNVECVAFEGLLADLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKEIYPFISKV
1QJC Chain:B ((2-150))
--KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAK
General information:
TITO was launched using:
RESULT:
Template:
1QJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111610 for 1160 contacts (-96.2/contact) +
2D Compatibility (PS) -15808 + (NN) -3281 + (LL) 328
1D Compatibility (HY) -15600 + (ID) 3600
Total energy: -149571.0 ( -128.94 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_1QJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QJC-query.scw
PDB file :
Tito_Scwrl_1QJC.pdb
: