Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFGLNIDHIVTLREVRKTYEPEILEALFIAKNTHKVDLITIHLREDKRHIQNEDVLRLLEISPLPINIECSINAEITDFLCSLKNKPSKVTIVPENRNEVTTEGGLDCSLK--GLEEVIRAYHNKGIEVSLFVDPLKDALHFAKEHQVKQVEFHTGVYANLHNALYSNANNQIHAISTLKDKCPKELKEELHNAFLQLRRMSKEAFF---MGIVVCAGHGLNYSNVKELLKIPSLRELNIGHSVVSKAVLVGLEKAILEMAQLIKR
1IXN Chain:D ((5-237))
--LGVNIDHIATLRNARGTAYPDPVQAAFIAEQA-GADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEM--LAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYADA--------------------KTDAEQAQELA-------RIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRLMLE
General information:
TITO was launched using:
RESULT:
Template:
1IXN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159772 for 2012 contacts (-79.4/contact) +
2D Compatibility (PS) -25081 + (NN) -17318 + (LL) 2252
1D Compatibility (HY) -15200 + (ID) 4900
Total energy: -220019.0 ( -109.35 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1IXN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IXN-query.scw
PDB file :
Tito_Scwrl_1IXN.pdb
: