Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGE-READFINCVVWRK-PAENVANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAES----VQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNNDPFASDGKPIDISDDDLPF
3PGZ Chain:A ((25-136))
SLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDR---KERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLD--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3PGZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47476 for 630 contacts (-75.4/contact) +
2D Compatibility (PS) -11031 + (NN) -2481 + (LL) -1856
1D Compatibility (HY) -8000 + (ID) 1650
Total energy: -72494.0 ( -115.07 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_3PGZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PGZ-query.scw
PDB file :
Tito_Scwrl_3PGZ.pdb
: