Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFSILMAIIQITGIFIAIQILTNKVFSIKEGLVTIAIAMLAFPLFTLVQYWSMIFVLIVFVSALYWKNKNVVVSASITLVVIILLTISDSIVGFILVPGLNFKYDEIFNELLPTLIYCAGMLANLLVFSFLLRKLIEKVNISRFVEHRKYAYIIFSIVALTVLAFYMNIYAGSIAGFDGSVLKINTLIFTGYTILLIVIVTVVINTATNELKVQNQKEQLEQLQDYVTTLESLHREMRVFRHDYVNILSTLVGY-IDNNDMPGLKYYFENNIVPINKTIESNNYKISLLQNIHVIELKGLLAVKLIRAQELKIDAILEVVEPIDKISMDSIDLCKVVGILLDNAVEAALTCENPVIRIAFVKKGDSIIIVFANSLPVNMPPIYKIFEEGFSTKGEGRGLGLASLREIMKKYSHVALDTKVTDREVIQELEIM |
1TGO Chain:A ((1-347)) | --MILDTDYITEDGKPVIRIFKKE-----NGEFKIDYDRNFEPYIYALLKDDSAIEDVKKITAERHG-----TTVRVVRAEKVKKKFLGRPIEVWKLYFTHPQDVPAIRDKIKEHPAVVDIYEYDIP---FAKRYLIDKGLIPMEGDEELKMLAFDIETLY---------HEGEEFAEGPILMISYADEEGARVITWKNI---------------DLPYVDVVSTEKEMIKRFLKVVKEKDPD------VLITYNGDNFDFAYLKKRSEKLGVKFILGREGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI-------------NLPTYTLEAVYEAIFGQPKE-----KVYAEEIAQAWETGEGLERVARYSMEDAKVTYELGKEFFPMEAQLSRLVGQSLWDVSRS---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1TGO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -312857 for 2722 contacts (-114.9/contact) +
2D Compatibility (PS) -36840 + (NN) 1036 + (LL) 8660
1D Compatibility (HY) 2000 + (ID) 2250
Total energy: -340251.0 ( -125.00 by residue)
QMean score : 0.170
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