Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVTSNINSELADGFQGYTDVRKITVNSTVDVGVSGSLTAVLGQVGSSFGLPGAIGGLGVGLVLDTILSLNGTKDTWKNSINEKMQDLEDWFRVEAK------
5CMZ Chain:B ((2-33))
-----------------------------------------------------------------------MTWEEWDKKIEELIKKSEELIKKIEEQIKKQE
General information:
TITO was launched using:
RESULT:
Template:
5CMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4410 for 97 contacts (45.5/contact) +
2D Compatibility (PS) -2908 + (NN) -1302 + (LL) 3136
1D Compatibility (HY) -1200 + (ID) 250
Total energy: 1886.0 ( 19.44 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_5CMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CMZ-query.scw
PDB file :
Tito_Scwrl_5CMZ.pdb
: