Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKLPPEADYLNDETLEVYENDKKKYDQTNQLITNNSVTILLGDFCYYESAWSSRWRDNRFWIGSKVS
2JMS Chain:A ((1-63))
--TDPEEHFDPNTNCD-YTNSQDAWDYCTNYIVNSSCGEICCNDCFDETG-TGACRAQAFGNSCLNW
General information:
TITO was launched using:
RESULT:
Template:
2JMS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8005 for 460 contacts (17.4/contact) +
2D Compatibility (PS) -6279 + (NN) 1439 + (LL) 604
1D Compatibility (HY) -2000 + (ID) 600
Total energy: 1169.0 ( 2.54 by residue)
QMean score : 0.001
(partial model without unconserved sides chains):
PDB file :
Tito_2JMS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JMS-query.scw
PDB file :
Tito_Scwrl_2JMS.pdb
: