Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VSRIDIGEIQAFLYQLRATNEPGRKTIQSIKAAVTKYVGDNSLKGKAVDASKNY-YQMTYFPLCDAIIEAMDESEERLGQYIQDFHAEVDSSPDAKIDADGLYELGKMIDRIESKK-----------EALAQRMNSGTEGQMQNYRSQLAIAYKQENILEKYLSFEQSHANFFDHLIDLVQAVQQTIRELQSNIQFNSQTGTYDLSKLNSATVSRMQQALNKSRGIK-EDIIKELRDYTVLAVVY----------------LDSNGKEQVMWLLERDGVGVENAELKAYLTENGKYLNPEDYTIITN-------EELNKKINQSWRDGVYYL--NGNKYDG-------------LTGGVLSTSAYVEAGKGYIDKSG-FADVVLGLGLSTAAIRGSLVYKKVNGPYKQNIKNRYPNEVQQGKIFDYTL------ENGQVKIR-DGIKEVDFIIDLQGNLKVGRGHAH-------LSNGGDVQAAGKLKVDSNGNV----RRITNESGH-YTPTL--GQAKNYQQIFENTGINTKNAWLE-----TYQLDVTKSGYVDLAKLKRIDSVKLK |
| 4V2X Chain:A ((54-587)) | -KTLD---IQSYVRDMQPGWNLG-NTFDAVGQDETAW-GNPRVTRELIEQIADEGYKSIRIPVT--------------------WENRIGGAPDYPIDPQFLNRVDQVVQWALEEDLYVMINLHHDSWLWIYEMEHNYNGVMVKYRSLWEQLSNHFKDYPTKLMFESVNEPKFSQNWGEIRENHHALLDDLNTVFFEIVRQSGGQNDIRPLVLPTMETATSQPLLNNLYQTIDKLDDPNLIATVHYYGFWPFSVNIAGYTRFEENSKQEIIEAFDRVHHTFVARGIPVVLGEFGLLGFDKHTGVIQQGEKLKFFEFLIHHLNE--RDITHMLWDNGQHFNRHTYEWYDQELFDMMRASWEGRSSVAESNFIYLKQGDRIADATVSLQLHGNELTGLRANGQRLTPGQDYELNGERLTVK-AHVLSAIASSGTLGTNGMVTAEFNRGADWHFRVNTYRTPVLQSTQGHVSNFSIPASFNGNSLATMEAVYVDGGNAGPQDWTSFKEFGYAFSPSYDANEMKLTEAFFREVRDGEVRLTFHFWSGETVNYTIIKNG-------NQVTGIAAQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4V2X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 11859 for 3390 contacts (3.5/contact) +
2D Compatibility (PS) -48024 + (NN) -1973 + (LL) 3340
1D Compatibility (HY) -11200 + (ID) 3800
Total energy: -49798.0 ( -14.69 by residue)
QMean score : 0.171
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