Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VDSEMNHDFDLEKQFAFFVVNFRMSKHDFEELTEVEKNFIMKEWENKVIFESTMLRNAVLNAEQNLNRK--RNSRFIDLHKKRQKKADVNYTVNALQAISENEAKEGKAWIDRIYGANGLRRPKNKEERRNVNGGF |
2VPN Chain:A ((211-269)) | -------------------TAMMANQDFYEGLSEEDQQLVQDAADAAYDHTIEHIKGLSEESLE-KIKAASDEVTVTRL--------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VPN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 597 for 221 contacts (2.7/contact) +
2D Compatibility (PS) -6201 + (NN) -1816 + (LL) 4564
1D Compatibility (HY) 1200 + (ID) 200
Total energy: -1856.0 ( -8.40 by residue)
QMean score : 0.313
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