Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDEETLLERGYRKYRGADVDIYFNTNVCEHSGNCVKGNVE-LFNLDRKPWIM------PDNVSKEEAKRVIHTCPSGALQYIEK
2IVF Chain:B ((175-238))
------------------GIVLVDQERCKGHRHCVEACPYKAIYFNPVSQTSEKCILCYPRIEKGIANACNRQCPGRVRAFG--
General information:
TITO was launched using:
RESULT:
Template:
2IVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16095 for 250 contacts (-64.4/contact) +
2D Compatibility (PS) -5662 + (NN) -293 + (LL) 1288
1D Compatibility (HY) -800 + (ID) 350
Total energy: -21912.0 ( -87.65 by residue)
QMean score : 0.302
(partial model without unconserved sides chains):
PDB file :
Tito_2IVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IVF-query.scw
PDB file :
Tito_Scwrl_2IVF.pdb
: